Variant report

Variant	rs60905866
Chromosome Location	chr5:112032575-112032576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10515446	0.96[ASN][1000 genomes]
rs1644240	0.82[ASN][1000 genomes]
rs17134859	0.94[ASN][1000 genomes]
rs56015954	1.00[ASN][1000 genomes]
rs58625991	0.93[ASN][1000 genomes]
rs6867376	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6891448	0.93[AMR][1000 genomes]
rs73216203	0.98[ASN][1000 genomes]
rs7703438	0.82[ASN][1000 genomes]
rs7706623	0.85[ASN][1000 genomes]
rs7712157	0.82[ASN][1000 genomes]
rs7712303	0.82[ASN][1000 genomes]
rs7712537	0.82[ASN][1000 genomes]
rs7728216	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112027000-112032600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:112031400-112032800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:112031400-112033000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:112031400-112033200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:112031400-112034000	Enhancers	K562	blood
6	chr5:112031600-112033600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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