Variant report

Variant	rs73216203
Chromosome Location	chr5:112024530-112024531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10515446	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1644240	0.80[ASN][1000 genomes]
rs17134859	0.96[ASN][1000 genomes]
rs56015954	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs58625991	0.91[ASN][1000 genomes]
rs60905866	0.98[ASN][1000 genomes]
rs6867376	0.83[ASN][1000 genomes]
rs7703438	0.80[ASN][1000 genomes]
rs7706623	0.83[ASN][1000 genomes]
rs7712157	0.80[ASN][1000 genomes]
rs7712303	0.80[ASN][1000 genomes]
rs7712537	0.80[ASN][1000 genomes]
rs7728216	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112020400-112024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:112020800-112025000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:112021000-112026600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:112021000-112026600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:112021800-112030600	Weak transcription	Osteobl	bone
6	chr5:112022200-112025200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:112022200-112026400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:112022600-112030600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:112023400-112024600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:112024200-112025400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:112024200-112027200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:112024200-112027800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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