Variant report

Variant	rs60921332
Chromosome Location	chr8:49746932-49746933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17633424	1.00[AFR][1000 genomes]
rs28407768	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56726693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890854	chr8:49738821-49838908	Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49734000-49748200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49734600-49747800	Weak transcription	NHEK	skin
3	chr8:49737600-49747800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:49746200-49751000	Weak transcription	Fetal Kidney	kidney
5	chr8:49746600-49748000	Weak transcription	Fetal Lung	lung
6	chr8:49746600-49748600	Enhancers	Fetal Muscle Trunk	muscle
7	chr8:49746800-49747400	Weak transcription	Esophagus	oesophagus
8	chr8:49746800-49751000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:49746800-49751600	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links