Variant report

Variant	rs60931106
Chromosome Location	chr6:133132830-133132831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57060973	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57685859	1.00[AMR][1000 genomes]
rs59646391	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61228504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554439	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73554447	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133120800-133134000	Weak transcription	Pancreas	Pancrea
2	chr6:133121200-133133600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:133130000-133133600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:133131200-133133200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:133131600-133133600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:133131800-133133400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:133132200-133133000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:133132200-133133600	Enhancers	Adipose Nuclei	Adipose
9	chr6:133132400-133133200	Enhancers	Liver	Liver
10	chr6:133132400-133133400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:133132600-133133400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:133132600-133133600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:133132600-133133600	Enhancers	HepG2	liver
14	chr6:133132800-133133000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:133132800-133133000	Flanking Active TSS	K562	blood
16	chr6:133132800-133133400	Enhancers	Stomach Mucosa	stomach
17	chr6:133132800-133133600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:133132800-133133600	Weak transcription	Fetal Lung	lung
19	chr6:133132800-133133600	Weak transcription	Small Intestine	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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