Variant report

Variant	rs60934399
Chromosome Location	chr13:95617592-95617593
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013388	0.81[ASN][1000 genomes]
rs10508010	0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11618778	0.85[ASN][1000 genomes]
rs12868208	0.80[ASN][1000 genomes]
rs1925851	0.80[ASN][1000 genomes]
rs1925856	0.80[ASN][1000 genomes]
rs1925858	0.85[ASN][1000 genomes]
rs1925860	0.83[ASN][1000 genomes]
rs1925861	0.85[ASN][1000 genomes]
rs1925862	0.85[ASN][1000 genomes]
rs1925863	0.85[ASN][1000 genomes]
rs1925865	0.85[ASN][1000 genomes]
rs1925866	0.85[ASN][1000 genomes]
rs1998803	0.85[ASN][1000 genomes]
rs1998804	0.85[ASN][1000 genomes]
rs56193309	0.85[ASN][1000 genomes]
rs60025239	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61965530	0.85[ASN][1000 genomes]
rs61965531	0.85[ASN][1000 genomes]
rs61965532	0.85[ASN][1000 genomes]
rs61965533	0.85[ASN][1000 genomes]
rs61965534	0.85[ASN][1000 genomes]
rs6492761	0.85[ASN][1000 genomes]
rs726482	0.85[ASN][1000 genomes]
rs7997804	0.85[ASN][1000 genomes]
rs7997815	0.85[ASN][1000 genomes]
rs9302035	0.85[ASN][1000 genomes]
rs9516500	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9516506	0.85[ASN][1000 genomes]
rs9524716	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9524717	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9524719	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9524722	0.83[ASN][1000 genomes]
rs9524725	0.85[ASN][1000 genomes]
rs9524732	0.85[ASN][1000 genomes]
rs9556444	0.80[ASN][1000 genomes]
rs9556445	0.83[ASN][1000 genomes]
rs9556447	0.85[ASN][1000 genomes]
rs9556449	0.85[ASN][1000 genomes]
rs9561742	0.85[ASN][1000 genomes]
rs9561743	0.85[ASN][1000 genomes]
rs9561744	0.85[ASN][1000 genomes]
rs9561745	0.85[ASN][1000 genomes]
rs9561746	0.85[ASN][1000 genomes]
rs9561749	0.85[ASN][1000 genomes]
rs9561750	0.85[ASN][1000 genomes]
rs9561751	0.85[ASN][1000 genomes]
rs9561752	0.85[ASN][1000 genomes]
rs9561753	0.85[ASN][1000 genomes]
rs9561754	0.82[ASN][1000 genomes]
rs9561757	0.85[ASN][1000 genomes]
rs9561758	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv274954	chr13:95617339-95621812	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95616000-95618400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95616200-95618000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95616400-95618000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95616400-95619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95616600-95617800	Weak transcription	Stomach Mucosa	stomach

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