Variant report

Variant	rs1925856
Chromosome Location	chr13:95616611-95616612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10508010	0.83[ASN][1000 genomes]
rs11618778	0.81[ASN][1000 genomes]
rs12868208	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1925851	1.00[ASN][1000 genomes]
rs1925858	0.81[ASN][1000 genomes]
rs1925859	0.91[ASN][1000 genomes]
rs1925861	0.81[ASN][1000 genomes]
rs1925862	0.81[ASN][1000 genomes]
rs1925863	0.81[ASN][1000 genomes]
rs1925865	0.81[ASN][1000 genomes]
rs1925866	0.81[ASN][1000 genomes]
rs1925868	0.91[ASN][1000 genomes]
rs1998803	0.81[ASN][1000 genomes]
rs1998804	0.81[ASN][1000 genomes]
rs2209537	0.91[ASN][1000 genomes]
rs2209538	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56193309	0.81[ASN][1000 genomes]
rs60934399	0.80[ASN][1000 genomes]
rs61965530	0.81[ASN][1000 genomes]
rs61965531	0.81[ASN][1000 genomes]
rs61965532	0.81[ASN][1000 genomes]
rs61965533	0.81[ASN][1000 genomes]
rs61965534	0.81[ASN][1000 genomes]
rs6492761	0.81[ASN][1000 genomes]
rs726482	0.81[ASN][1000 genomes]
rs7336687	0.91[ASN][1000 genomes]
rs7997804	0.81[ASN][1000 genomes]
rs7997815	0.81[ASN][1000 genomes]
rs9302035	0.81[ASN][1000 genomes]
rs9516500	0.84[ASN][1000 genomes]
rs9516506	0.81[ASN][1000 genomes]
rs9524716	0.90[ASN][1000 genomes]
rs9524717	0.89[ASN][1000 genomes]
rs9524719	0.83[ASN][1000 genomes]
rs9524725	0.81[ASN][1000 genomes]
rs9524732	0.81[ASN][1000 genomes]
rs9556444	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556447	0.81[ASN][1000 genomes]
rs9556448	0.91[ASN][1000 genomes]
rs9556449	0.81[ASN][1000 genomes]
rs9561742	0.81[ASN][1000 genomes]
rs9561743	0.81[ASN][1000 genomes]
rs9561744	0.81[ASN][1000 genomes]
rs9561745	0.81[ASN][1000 genomes]
rs9561746	0.81[ASN][1000 genomes]
rs9561749	0.81[ASN][1000 genomes]
rs9561750	0.81[ASN][1000 genomes]
rs9561751	0.81[ASN][1000 genomes]
rs9561752	0.81[ASN][1000 genomes]
rs9561753	0.81[ASN][1000 genomes]
rs9561757	0.81[ASN][1000 genomes]
rs9561758	0.81[ASN][1000 genomes]
rs9590150	0.91[ASN][1000 genomes]
rs9590152	0.88[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1925856	DCT	cis	cerebellum	SCAN
rs1925856	ABCC4	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95616000-95618400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:95616200-95618000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:95616400-95618000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr13:95616400-95619600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95616600-95617800	Weak transcription	Stomach Mucosa	stomach

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