Variant report

Variant	rs2209538
Chromosome Location	chr13:95640035-95640036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1013388	0.86[ASN][1000 genomes]
rs10508010	0.86[ASN][1000 genomes]
rs11618778	0.89[ASN][1000 genomes]
rs12868208	0.91[ASN][1000 genomes]
rs1925851	0.91[ASN][1000 genomes]
rs1925856	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925858	0.89[ASN][1000 genomes]
rs1925859	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1925860	0.88[ASN][1000 genomes]
rs1925861	0.89[ASN][1000 genomes]
rs1925862	0.89[ASN][1000 genomes]
rs1925863	0.89[ASN][1000 genomes]
rs1925865	0.89[ASN][1000 genomes]
rs1925866	0.89[ASN][1000 genomes]
rs1925868	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1998803	0.89[ASN][1000 genomes]
rs1998804	0.89[ASN][1000 genomes]
rs2209537	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56193309	0.89[ASN][1000 genomes]
rs61965530	0.89[ASN][1000 genomes]
rs61965531	0.89[ASN][1000 genomes]
rs61965532	0.89[ASN][1000 genomes]
rs61965533	0.89[ASN][1000 genomes]
rs61965534	0.89[ASN][1000 genomes]
rs6492761	0.89[ASN][1000 genomes]
rs726482	0.89[ASN][1000 genomes]
rs7336687	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7997804	0.89[ASN][1000 genomes]
rs7997815	0.89[ASN][1000 genomes]
rs9302035	0.89[ASN][1000 genomes]
rs9302036	0.81[ASN][1000 genomes]
rs9516500	0.87[ASN][1000 genomes]
rs9516506	0.89[ASN][1000 genomes]
rs9524716	0.81[ASN][1000 genomes]
rs9524717	0.82[ASN][1000 genomes]
rs9524719	0.88[ASN][1000 genomes]
rs9524722	0.86[ASN][1000 genomes]
rs9524725	0.89[ASN][1000 genomes]
rs9524732	0.89[ASN][1000 genomes]
rs9556444	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9556445	0.88[ASN][1000 genomes]
rs9556447	0.89[ASN][1000 genomes]
rs9556448	0.99[ASN][1000 genomes]
rs9556449	0.89[ASN][1000 genomes]
rs9561742	0.89[ASN][1000 genomes]
rs9561743	0.89[ASN][1000 genomes]
rs9561744	0.89[ASN][1000 genomes]
rs9561745	0.89[ASN][1000 genomes]
rs9561746	0.89[ASN][1000 genomes]
rs9561749	0.89[ASN][1000 genomes]
rs9561750	0.89[ASN][1000 genomes]
rs9561751	0.89[ASN][1000 genomes]
rs9561752	0.89[ASN][1000 genomes]
rs9561753	0.89[ASN][1000 genomes]
rs9561754	0.87[ASN][1000 genomes]
rs9561757	0.89[ASN][1000 genomes]
rs9561758	0.89[ASN][1000 genomes]
rs9561759	0.80[ASN][1000 genomes]
rs9590150	0.99[ASN][1000 genomes]
rs9590152	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2761812	chr13:95639780-95643937	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95637600-95640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:95637600-95640800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr13:95637600-95645200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:95638000-95644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:95639400-95641000	Enhancers	Stomach Mucosa	stomach

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