Variant report

Variant	rs9590150
Chromosome Location	chr13:95630857-95630858
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95626619..95628570-chr13:95630331..95633317,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1013388	0.85[ASN][1000 genomes]
rs10508010	0.85[ASN][1000 genomes]
rs11618778	0.89[ASN][1000 genomes]
rs12868208	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925851	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925856	0.91[ASN][1000 genomes]
rs1925858	0.89[ASN][1000 genomes]
rs1925859	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1925860	0.87[ASN][1000 genomes]
rs1925861	0.89[ASN][1000 genomes]
rs1925862	0.89[ASN][1000 genomes]
rs1925863	0.89[ASN][1000 genomes]
rs1925865	0.89[ASN][1000 genomes]
rs1925866	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1925868	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1998803	0.89[ASN][1000 genomes]
rs1998804	0.89[ASN][1000 genomes]
rs2209537	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2209538	0.99[ASN][1000 genomes]
rs56193309	0.89[ASN][1000 genomes]
rs61965530	0.89[ASN][1000 genomes]
rs61965531	0.89[ASN][1000 genomes]
rs61965532	0.89[ASN][1000 genomes]
rs61965533	0.89[ASN][1000 genomes]
rs61965534	0.89[ASN][1000 genomes]
rs6492761	0.89[ASN][1000 genomes]
rs726482	0.89[ASN][1000 genomes]
rs7336687	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7997804	0.89[ASN][1000 genomes]
rs7997815	0.89[ASN][1000 genomes]
rs9302035	0.89[ASN][1000 genomes]
rs9302036	0.80[ASN][1000 genomes]
rs9516500	0.86[ASN][1000 genomes]
rs9516506	0.89[ASN][1000 genomes]
rs9524716	0.80[ASN][1000 genomes]
rs9524717	0.81[ASN][1000 genomes]
rs9524719	0.87[ASN][1000 genomes]
rs9524722	0.87[ASN][1000 genomes]
rs9524725	0.89[ASN][1000 genomes]
rs9524732	0.89[ASN][1000 genomes]
rs9556444	0.91[ASN][1000 genomes]
rs9556445	0.87[ASN][1000 genomes]
rs9556447	0.89[ASN][1000 genomes]
rs9556448	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9556449	0.89[ASN][1000 genomes]
rs9561742	0.89[ASN][1000 genomes]
rs9561743	0.89[ASN][1000 genomes]
rs9561744	0.89[ASN][1000 genomes]
rs9561745	0.89[ASN][1000 genomes]
rs9561746	0.89[ASN][1000 genomes]
rs9561749	0.89[ASN][1000 genomes]
rs9561750	0.89[ASN][1000 genomes]
rs9561751	0.89[ASN][1000 genomes]
rs9561752	0.89[ASN][1000 genomes]
rs9561753	0.89[ASN][1000 genomes]
rs9561754	0.86[ASN][1000 genomes]
rs9561757	0.89[ASN][1000 genomes]
rs9561758	0.89[ASN][1000 genomes]
rs9590152	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv974230	chr13:95630218-95632750	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9590150	DCT	cis	cerebellum	SCAN
rs9590150	ABCC4	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95627200-95635800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:95627800-95631200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:95627800-95633400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:95630200-95632200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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