Variant report

Variant	rs1925859
Chromosome Location	chr13:95645826-95645827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1013388	0.86[ASN][1000 genomes]
rs10508010	0.86[ASN][1000 genomes]
rs11618778	0.89[ASN][1000 genomes]
rs12868208	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925851	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1925856	0.91[ASN][1000 genomes]
rs1925858	0.89[ASN][1000 genomes]
rs1925860	0.88[ASN][1000 genomes]
rs1925861	0.89[ASN][1000 genomes]
rs1925862	0.89[ASN][1000 genomes]
rs1925863	0.89[ASN][1000 genomes]
rs1925865	0.89[ASN][1000 genomes]
rs1925866	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1925868	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998803	0.89[ASN][1000 genomes]
rs1998804	0.89[ASN][1000 genomes]
rs2209537	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209538	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56193309	0.89[ASN][1000 genomes]
rs61965530	0.89[ASN][1000 genomes]
rs61965531	0.89[ASN][1000 genomes]
rs61965532	0.89[ASN][1000 genomes]
rs61965533	0.89[ASN][1000 genomes]
rs61965534	0.89[ASN][1000 genomes]
rs6492761	0.89[ASN][1000 genomes]
rs726482	0.89[ASN][1000 genomes]
rs7336687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997804	0.89[ASN][1000 genomes]
rs7997815	0.89[ASN][1000 genomes]
rs9302035	0.89[ASN][1000 genomes]
rs9302036	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9516500	0.87[ASN][1000 genomes]
rs9516506	0.89[ASN][1000 genomes]
rs9524716	0.81[ASN][1000 genomes]
rs9524717	0.82[ASN][1000 genomes]
rs9524719	0.88[ASN][1000 genomes]
rs9524722	0.86[ASN][1000 genomes]
rs9524725	0.89[ASN][1000 genomes]
rs9524732	0.89[ASN][1000 genomes]
rs9556444	0.91[ASN][1000 genomes]
rs9556445	0.88[ASN][1000 genomes]
rs9556447	0.89[ASN][1000 genomes]
rs9556448	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9556449	0.89[ASN][1000 genomes]
rs9561742	0.89[ASN][1000 genomes]
rs9561743	0.89[ASN][1000 genomes]
rs9561744	0.89[ASN][1000 genomes]
rs9561745	0.89[ASN][1000 genomes]
rs9561746	0.89[ASN][1000 genomes]
rs9561749	0.89[ASN][1000 genomes]
rs9561750	0.89[ASN][1000 genomes]
rs9561751	0.89[ASN][1000 genomes]
rs9561752	0.89[ASN][1000 genomes]
rs9561753	0.89[ASN][1000 genomes]
rs9561754	0.87[ASN][1000 genomes]
rs9561757	0.89[ASN][1000 genomes]
rs9561758	0.89[ASN][1000 genomes]
rs9561759	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9590150	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9590152	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832688	chr13:95633193-95780198	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95641400-95646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:95643800-95647600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:95644000-95646600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:95644400-95646800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:95644800-95646000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr13:95645000-95646600	Enhancers	Osteobl	bone
7	chr13:95645000-95646800	Enhancers	Ovary	ovary
8	chr13:95645200-95646000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr13:95645200-95646600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:95645200-95648400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:95645200-95648600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:95645400-95646800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:95645400-95648200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr13:95645400-95648400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr13:95645400-95650600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:95645600-95646200	Enhancers	Fetal Lung	lung
17	chr13:95645600-95648400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:95645800-95646400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr13:95645800-95648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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