Variant report

Variant	rs60946225
Chromosome Location	chr4:31012810-31012811
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55971541	0.81[AFR][1000 genomes]
rs56009522	0.81[AFR][1000 genomes]
rs56344969	0.81[AFR][1000 genomes]
rs56372203	0.81[AFR][1000 genomes]
rs56674207	0.81[AFR][1000 genomes]
rs58844173	0.81[AFR][1000 genomes]
rs73812503	0.81[AFR][1000 genomes]
rs73812505	0.81[AFR][1000 genomes]
rs73815149	0.81[AFR][1000 genomes]
rs73815155	0.81[AFR][1000 genomes]
rs73815161	0.81[AFR][1000 genomes]
rs73815164	0.81[AFR][1000 genomes]
rs73815169	0.81[AFR][1000 genomes]
rs73815170	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30998000-31018000	Weak transcription	Aorta	Aorta
2	chr4:31009400-31022000	Weak transcription	Fetal Stomach	stomach
3	chr4:31011400-31013000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:31012600-31013200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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