Variant report

Variant	rs58844173
Chromosome Location	chr4:31015905-31015906
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55971541	1.00[AFR][1000 genomes]
rs56009522	1.00[AFR][1000 genomes]
rs56344969	1.00[AFR][1000 genomes]
rs56372203	1.00[AFR][1000 genomes]
rs56674207	1.00[AFR][1000 genomes]
rs57182771	0.90[AFR][1000 genomes]
rs60946225	0.81[AFR][1000 genomes]
rs73812503	1.00[AFR][1000 genomes]
rs73812505	1.00[AFR][1000 genomes]
rs73815113	0.89[AFR][1000 genomes]
rs73815123	0.90[AFR][1000 genomes]
rs73815124	0.90[AFR][1000 genomes]
rs73815125	0.90[AFR][1000 genomes]
rs73815131	0.90[AFR][1000 genomes]
rs73815132	0.90[AFR][1000 genomes]
rs73815137	0.90[AFR][1000 genomes]
rs73815142	0.90[AFR][1000 genomes]
rs73815149	1.00[AFR][1000 genomes]
rs73815155	1.00[AFR][1000 genomes]
rs73815161	1.00[AFR][1000 genomes]
rs73815164	1.00[AFR][1000 genomes]
rs73815168	0.89[AFR][1000 genomes]
rs73815169	1.00[AFR][1000 genomes]
rs73815170	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv3388732	chr4:31013654-31017252	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30998000-31018000	Weak transcription	Aorta	Aorta
2	chr4:31009400-31022000	Weak transcription	Fetal Stomach	stomach
3	chr4:31013000-31018000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:31015200-31016400	Enhancers	Fetal Heart	heart
5	chr4:31015800-31016200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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