Variant report

Variant	rs73815142
Chromosome Location	chr4:30993151-30993152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55971541	0.90[AFR][1000 genomes]
rs56009522	0.90[AFR][1000 genomes]
rs56344969	0.90[AFR][1000 genomes]
rs56372203	0.90[AFR][1000 genomes]
rs56674207	0.90[AFR][1000 genomes]
rs57182771	1.00[AFR][1000 genomes]
rs58844173	0.90[AFR][1000 genomes]
rs73812503	0.90[AFR][1000 genomes]
rs73812505	0.90[AFR][1000 genomes]
rs73815123	1.00[AFR][1000 genomes]
rs73815124	1.00[AFR][1000 genomes]
rs73815125	1.00[AFR][1000 genomes]
rs73815131	1.00[AFR][1000 genomes]
rs73815132	1.00[AFR][1000 genomes]
rs73815136	0.83[AFR][1000 genomes]
rs73815137	1.00[AFR][1000 genomes]
rs73815139	0.83[AFR][1000 genomes]
rs73815140	0.83[AFR][1000 genomes]
rs73815149	0.90[AFR][1000 genomes]
rs73815155	0.90[AFR][1000 genomes]
rs73815161	0.90[AFR][1000 genomes]
rs73815164	0.90[AFR][1000 genomes]
rs73815169	0.90[AFR][1000 genomes]
rs73815170	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv878811	chr4:30987395-31019279	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30982000-30998400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:30992800-30993200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:30993000-30997400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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