Variant report

Variant	rs73815113
Chromosome Location	chr4:30955066-30955067
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12499716	0.89[AFR][1000 genomes]
rs55971541	0.89[AFR][1000 genomes]
rs56009522	0.89[AFR][1000 genomes]
rs56344969	0.89[AFR][1000 genomes]
rs56372203	0.89[AFR][1000 genomes]
rs56674207	0.89[AFR][1000 genomes]
rs57615189	0.89[AFR][1000 genomes]
rs58844173	0.89[AFR][1000 genomes]
rs73812503	0.89[AFR][1000 genomes]
rs73812505	0.89[AFR][1000 genomes]
rs73812510	0.89[AFR][1000 genomes]
rs73812702	0.89[AFR][1000 genomes]
rs73815149	0.89[AFR][1000 genomes]
rs73815155	0.89[AFR][1000 genomes]
rs73815161	0.89[AFR][1000 genomes]
rs73815164	0.89[AFR][1000 genomes]
rs73815168	1.00[AFR][1000 genomes]
rs73815169	0.89[AFR][1000 genomes]
rs73815170	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878810	chr4:30823157-30987395	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30928600-30997400	Weak transcription	Fetal Lung	lung
2	chr4:30948200-30956000	Weak transcription	Fetal Heart	heart
3	chr4:30949400-30955800	Enhancers	Hela-S3	cervix
4	chr4:30950800-30956400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:30951600-30955200	Enhancers	Fetal Intestine Large	intestine
6	chr4:30951600-30956400	Enhancers	Fetal Intestine Small	intestine
7	chr4:30952800-30955600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:30952800-30956000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:30953400-30955200	Enhancers	NHEK	skin
10	chr4:30953600-30957200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:30953600-30964200	Weak transcription	Aorta	Aorta
12	chr4:30954000-30955200	Enhancers	A549	lung
13	chr4:30954800-30956000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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