Variant report

Variant	rs60958160
Chromosome Location	chr9:78837945-78837946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10046791	1.00[AMR][1000 genomes]
rs12005140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005218	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336206	1.00[AMR][1000 genomes]
rs28584572	1.00[AMR][1000 genomes]
rs28701906	1.00[AMR][1000 genomes]
rs57017231	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57051395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57162404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61153189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61240461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7021121	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7853238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78814000-78848200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr9:78830800-78842400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:78832200-78838800	Weak transcription	NHLF	lung
4	chr9:78833200-78838600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:78833600-78838800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr9:78834200-78838400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr9:78834800-78838400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:78834800-78840600	Weak transcription	Fetal Intestine Small	intestine
9	chr9:78835000-78840400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr9:78836800-78839400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:78837000-78839000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:78837000-78840600	Weak transcription	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links