Variant report

Variant	rs7021121
Chromosome Location	chr9:78850290-78850291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10046791	1.00[AMR][1000 genomes]
rs12005140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12005218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12336206	1.00[AMR][1000 genomes]
rs28584572	1.00[AMR][1000 genomes]
rs28701906	1.00[AMR][1000 genomes]
rs57017231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57051395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57162404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60958160	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61153189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61240461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7853238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869152	chr9:78742197-79583399	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv893476	chr9:78768830-78887992	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:78839600-78853800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:78841200-78859400	Weak transcription	Colonic Mucosa	Colon
3	chr9:78843200-78851400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:78844400-78859000	Strong transcription	Fetal Intestine Large	intestine
5	chr9:78846800-78850800	Strong transcription	Duodenum Mucosa	Duodenum
6	chr9:78847400-78851000	Weak transcription	Pancreas	Pancrea
7	chr9:78848200-78853200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:78849200-78852800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:78849400-78852800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:78850000-78852400	Weak transcription	Fetal Intestine Small	intestine
11	chr9:78850000-78854000	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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