Variant report

Variant	rs60968131
Chromosome Location	chr10:94028578-94028579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11814285	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35412677	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57644484	0.81[AMR][1000 genomes]
rs57762009	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6583807	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7074872	0.89[AMR][1000 genomes]
rs7096690	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73318005	0.81[AMR][1000 genomes]
rs73318015	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73318028	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73318084	0.89[AMR][1000 genomes]
rs7901728	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94020200-94049800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:94021200-94039200	Weak transcription	Psoas Muscle	Psoas
3	chr10:94025800-94049800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:94026000-94028600	Weak transcription	Ovary	ovary
5	chr10:94026200-94028600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:94026600-94038800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:94027400-94039600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:94027800-94028600	Weak transcription	Aorta	Aorta
9	chr10:94028000-94029200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:94028200-94029000	Enhancers	GM12878-XiMat	blood
11	chr10:94028200-94029000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr10:94028400-94038800	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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