Variant report

Variant	rs73318005
Chromosome Location	chr10:93966991-93966992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93958713..93960977-chr10:93966306..93968107,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17107487	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs57644484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58634949	0.81[AMR][1000 genomes]
rs60968131	0.81[AMR][1000 genomes]
rs61204062	0.91[AMR][1000 genomes]
rs7901728	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9919492	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975763	chr10:93822289-94105956	Enhancers Bivalent Enhancer Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	esv2761614	chr10:93960695-93981177	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv948139	chr10:93966694-93969883	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93926400-93976000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:93926600-93976000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:93926800-93982400	Weak transcription	HSMMtube	muscle
4	chr10:93927000-93970800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:93927200-93967600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:93927200-93980400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:93927400-93970800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:93927400-93997800	Weak transcription	Fetal Intestine Large	intestine
9	chr10:93929200-93984800	Weak transcription	Fetal Intestine Small	intestine
10	chr10:93929400-93967800	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:93934200-93976200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:93940200-93971200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:93940600-93970800	Weak transcription	Fetal Stomach	stomach
14	chr10:93941800-93968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:93941800-93971200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr10:93947800-93967800	Weak transcription	GM12878-XiMat	blood
17	chr10:93956200-93967000	Weak transcription	Fetal Heart	heart
18	chr10:93958200-93968400	Weak transcription	Right Atrium	heart
19	chr10:93958400-93967600	Weak transcription	Brain Anterior Caudate	brain
20	chr10:93958400-93981000	Weak transcription	Psoas Muscle	Psoas
21	chr10:93958800-93967000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr10:93958800-93967000	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:93959000-93969800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:93959000-93985800	Weak transcription	Brain Substantia Nigra	brain
25	chr10:93960800-93967000	Weak transcription	K562	blood
26	chr10:93960800-93970000	Weak transcription	Hela-S3	cervix
27	chr10:93960800-93970800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr10:93960800-93976000	Weak transcription	Gastric	stomach
29	chr10:93961000-93990800	Weak transcription	Spleen	Spleen
30	chr10:93961600-93972200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:93962000-93967000	Weak transcription	Stomach Mucosa	stomach
32	chr10:93962000-93976400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:93963000-93976400	Weak transcription	Aorta	Aorta
34	chr10:93964000-93967400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr10:93964200-93967400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:93964200-93968400	Weak transcription	Esophagus	oesophagus
37	chr10:93964200-93968400	Weak transcription	Pancreas	Pancrea
38	chr10:93964200-93976200	Weak transcription	Right Ventricle	heart
39	chr10:93964200-93993000	Weak transcription	Fetal Brain Female	brain
40	chr10:93964200-93996000	Weak transcription	Brain Germinal Matrix	brain
41	chr10:93964200-93997600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:93964400-93970000	Weak transcription	Brain Angular Gyrus	brain
43	chr10:93964400-93982400	Weak transcription	HSMM	muscle
44	chr10:93965000-93970000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:93966200-93967400	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr10:93966200-93967400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr10:93966400-93986200	Weak transcription	Ovary	ovary
48	chr10:93966800-93967600	Genic enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links