Variant report

Variant	rs60968867
Chromosome Location	chr9:21561809-21561810
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57703006	0.90[EUR][1000 genomes]
rs7029522	1.00[EUR][1000 genomes]
rs73426634	1.00[EUR][1000 genomes]
rs7857252	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21559400-21564200	Active TSS	A549	lung
2	chr9:21560400-21563600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:21560400-21563800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:21560600-21563600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:21560800-21562400	Enhancers	Osteobl	bone
6	chr9:21560800-21563800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:21560800-21564200	Weak transcription	NH-A	brain
8	chr9:21560800-21565200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:21560800-21567400	Weak transcription	NHDF-Ad	bronchial
10	chr9:21561000-21562000	Weak transcription	NHEK	skin
11	chr9:21561000-21563600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:21561000-21563600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:21561000-21563600	Weak transcription	HMEC	breast
14	chr9:21561000-21563800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:21561000-21563800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:21561000-21563800	Weak transcription	Hela-S3	cervix
17	chr9:21561000-21564400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:21561000-21565200	Weak transcription	NHLF	lung
19	chr9:21561800-21562000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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