Variant report

Variant	rs7029522
Chromosome Location	chr9:21559011-21559012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:76135557..76136462-chr9:21558206..21559124,2	HCT-116	colon:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57703006	0.90[EUR][1000 genomes]
rs60968867	1.00[EUR][1000 genomes]
rs73426634	1.00[EUR][1000 genomes]
rs7857252	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
2	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
3	nsv1029634	chr9:21542970-21765286	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3406465	chr9:21558577-21561125	Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21554800-21560600	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr9:21555200-21560000	Active TSS	Hela-S3	cervix
3	chr9:21555200-21560800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:21555800-21560200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:21556200-21559200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:21556200-21559200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:21556200-21560000	Active TSS	HMEC	breast
8	chr9:21556200-21560200	Active TSS	NH-A	brain
9	chr9:21556200-21560200	Active TSS	Osteobl	bone
10	chr9:21556200-21560400	Active TSS	NHLF	lung
11	chr9:21556400-21560000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:21556400-21560400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:21556400-21560600	Active TSS	NHDF-Ad	bronchial
14	chr9:21556600-21560200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:21557000-21560400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
16	chr9:21557400-21559400	Transcr. at gene 5' and 3'	A549	lung
17	chr9:21557400-21560000	Active TSS	HUVEC	blood vessel
18	chr9:21558200-21559200	Transcr. at gene 5' and 3'	NHEK	skin
19	chr9:21558200-21560200	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr9:21558200-21560200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
21	chr9:21558200-21560400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
22	chr9:21558200-21560600	Active TSS	HSMM	muscle
23	chr9:21558200-21560800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr9:21558400-21559200	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
25	chr9:21558400-21560200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:21558400-21560400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:21558400-21560400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
28	chr9:21558600-21559200	Active TSS	Psoas Muscle	Psoas
29	chr9:21558600-21559400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
30	chr9:21558600-21559400	Bivalent Enhancer	Primary B cells from cord blood	blood
31	chr9:21558600-21559400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr9:21558600-21559400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
33	chr9:21558600-21559400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
34	chr9:21558600-21559400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr9:21558600-21559600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr9:21558600-21559600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
37	chr9:21558600-21559600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:21558600-21560000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:21558600-21560000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
40	chr9:21558600-21560000	Bivalent/Poised TSS	Fetal Stomach	stomach
41	chr9:21558600-21560200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr9:21558600-21560200	Active TSS	H9 Cell Line	embryonic stem cell
43	chr9:21558600-21560200	Active TSS	Gastric	stomach
44	chr9:21558600-21560400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr9:21558600-21560400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr9:21558600-21560400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:21558600-21560400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr9:21558600-21560400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:21558600-21560400	Bivalent/Poised TSS	Esophagus	oesophagus
50	chr9:21558600-21560600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell

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