Variant report

Variant	rs60978129
Chromosome Location	chr10:98827311-98827312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11816416	1.00[EUR][1000 genomes]
rs11816735	1.00[EUR][1000 genomes]
rs12098344	1.00[EUR][1000 genomes]
rs57039373	1.00[EUR][1000 genomes]
rs57374557	1.00[EUR][1000 genomes]
rs57448470	1.00[EUR][1000 genomes]
rs57783543	1.00[EUR][1000 genomes]
rs57986254	1.00[EUR][1000 genomes]
rs59453737	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60222325	1.00[EUR][1000 genomes]
rs73320677	0.81[AMR][1000 genomes]
rs73326825	1.00[EUR][1000 genomes]
rs74152128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74152129	1.00[EUR][1000 genomes]
rs7912065	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1039568	chr10:98800844-98868329	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98797800-98830800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:98819400-98838400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:98820400-98829400	Weak transcription	Thymus	Thymus
4	chr10:98821800-98828600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:98822800-98827800	Weak transcription	Fetal Brain Female	brain
6	chr10:98825800-98828000	Weak transcription	Brain Germinal Matrix	brain
7	chr10:98826000-98827600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:98826000-98828400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:98826200-98829200	Enhancers	Fetal Brain Male	brain
10	chr10:98826400-98829400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:98826400-98835400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr10:98826600-98827400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr10:98826800-98827400	Enhancers	Psoas Muscle	Psoas
14	chr10:98827000-98827800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:98827200-98827400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
16	chr10:98827200-98827600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:98827200-98828600	Weak transcription	Fetal Thymus	thymus
18	chr10:98827200-98834000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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