Variant report
| Variant | rs60979554 |
|---|---|
| Chromosome Location | chr14:62984080-62984081 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | E2F4 | chr14:62984008-62984126 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000258638 | TF binding region |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10131260 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10131556 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10131643 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10134023 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10138562 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10143716 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10146413 | 0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1387672 | 0.97[ASN][1000 genomes] |
| rs1489861 | 0.97[ASN][1000 genomes] |
| rs2171832 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60114110 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60450551 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs61993924 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7156869 | 0.96[ASN][1000 genomes] |
| rs8014365 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043508 | chr14:62750671-63150403 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037232 | chr14:62758045-63116423 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv949518 | chr14:62777098-63123208 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
