Variant report
| Variant | rs60986520 |
|---|---|
| Chromosome Location | chr7:19662281-19662282 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs17141796 | 0.84[AMR][1000 genomes] |
| rs2390154 | 0.84[AMR][1000 genomes] |
| rs3735616 | 0.84[AMR][1000 genomes] |
| rs58056591 | 0.84[AMR][1000 genomes] |
| rs58354969 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs60221291 | 0.91[AMR][1000 genomes] |
| rs60983452 | 0.84[AMR][1000 genomes] |
| rs61052896 | 0.84[AMR][1000 genomes] |
| rs66483938 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66857203 | 0.91[AMR][1000 genomes] |
| rs67008311 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs67320494 | 0.91[AMR][1000 genomes] |
| rs67480144 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67667438 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs67685641 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6946719 | 0.91[AMR][1000 genomes] |
| rs73076839 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73270117 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73271905 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs73271979 | 0.84[AMR][1000 genomes] |
| rs73272001 | 0.84[AMR][1000 genomes] |
| rs73274016 | 0.84[AMR][1000 genomes] |
| rs73274032 | 0.84[AMR][1000 genomes] |
| rs73274033 | 0.84[AMR][1000 genomes] |
| rs73274035 | 0.84[AMR][1000 genomes] |
| rs73274039 | 0.84[AMR][1000 genomes] |
| rs9690343 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018601 | chr7:19272360-20008881 | Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | esv2752996 | chr7:19392086-19684019 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv887824 | chr7:19524863-19687779 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv8068 | chr7:19618846-19682421 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:19661000-19662800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr7:19661800-19663400 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
