Variant report

Variant	rs61005271
Chromosome Location	chr17:15074828-15074829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:15058947..15059640-chr17:15074737..15075359,2	MCF-7	breast:
2	chr17:15070513..15073044-chr17:15073910..15075547,2	K562	blood:
3	chr17:15074525..15075409-chr17:15116682..15117635,5	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12103534	0.87[EUR][1000 genomes]
rs12150190	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17564050	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4636946	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58228877	0.86[EUR][1000 genomes]
rs60518354	0.96[ASN][1000 genomes]
rs62072241	0.96[ASN][1000 genomes]
rs7209528	0.94[ASN][1000 genomes]
rs7210168	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8072767	0.97[ASN][1000 genomes]
rs8079699	0.94[ASN][1000 genomes]
rs9635677	0.87[EUR][1000 genomes]
rs9890427	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15073400-15075000	Weak transcription	NH-A	brain
2	chr17:15073600-15075200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr17:15074400-15075200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr17:15074400-15075200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:15074400-15075200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr17:15074400-15075200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:15074400-15075200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr17:15074400-15075400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr17:15074400-15075400	Enhancers	Fetal Heart	heart
10	chr17:15074600-15075000	Enhancers	Fetal Muscle Trunk	muscle
11	chr17:15074600-15075200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr17:15074600-15075200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr17:15074600-15075200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr17:15074600-15075200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:15074600-15075200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr17:15074600-15075200	Enhancers	Adipose Nuclei	Adipose
17	chr17:15074600-15075200	Enhancers	Brain Angular Gyrus	brain
18	chr17:15074600-15075200	Enhancers	Brain Cingulate Gyrus	brain
19	chr17:15074600-15075200	Enhancers	Brain Hippocampus Middle	brain
20	chr17:15074600-15075200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr17:15074600-15075200	Enhancers	Brain Substantia Nigra	brain
22	chr17:15074600-15075200	Enhancers	Fetal Lung	lung
23	chr17:15074600-15075400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr17:15074600-15075400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr17:15074800-15075200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr17:15074800-15076400	Weak transcription	Fetal Kidney	kidney
27	chr17:15074800-15077200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr17:15074800-15082400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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