Variant report

Variant	rs12150190
Chromosome Location	chr17:15075244-15075245
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12103534	0.87[EUR][1000 genomes]
rs13027	1.00[ASW][hapmap]
rs17564050	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4636946	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60518354	0.91[ASN][1000 genomes]
rs61005271	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62072241	0.91[ASN][1000 genomes]
rs7209528	0.89[ASN][1000 genomes]
rs7210168	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8072767	0.91[ASN][1000 genomes]
rs8079699	0.89[ASN][1000 genomes]
rs9635677	0.87[EUR][1000 genomes]
rs9890427	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15074400-15075400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr17:15074400-15075400	Enhancers	Fetal Heart	heart
3	chr17:15074600-15075400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr17:15074600-15075400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr17:15074800-15076400	Weak transcription	Fetal Kidney	kidney
6	chr17:15074800-15077200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:15074800-15082400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr17:15075200-15082400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr17:15075200-15083600	Weak transcription	Brain Hippocampus Middle	brain
10	chr17:15075200-15088200	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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