Variant report

Variant	rs13027
Chromosome Location	chr17:15133406-15133407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16951239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215236	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3744333	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785646	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs3785653	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3785654	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3826362	0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs59723054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6502439	0.91[EUR][1000 genomes]
rs7215851	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7221491	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812942	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73977960	0.94[EUR][1000 genomes]
rs73977961	0.94[EUR][1000 genomes]
rs740649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9889622	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9899379	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15124000-15136000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:15130600-15135000	Weak transcription	Spleen	Spleen
3	chr17:15130600-15135600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr17:15130600-15135600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr17:15131000-15134200	Strong transcription	HSMM	muscle
6	chr17:15131200-15134800	Weak transcription	Brain Angular Gyrus	brain
7	chr17:15131200-15141600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:15131600-15134800	Strong transcription	Stomach Smooth Muscle	stomach
9	chr17:15131600-15135800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr17:15131600-15135800	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr17:15131600-15136000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr17:15131600-15136000	Strong transcription	Adipose Nuclei	Adipose
13	chr17:15131600-15138000	Genic enhancers	Right Ventricle	heart
14	chr17:15131600-15139600	Weak transcription	Liver	Liver
15	chr17:15131600-15145600	Strong transcription	Fetal Muscle Trunk	muscle
16	chr17:15131800-15134400	Strong transcription	Brain Hippocampus Middle	brain
17	chr17:15131800-15134800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr17:15131800-15134800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr17:15131800-15135600	Weak transcription	Colonic Mucosa	Colon
20	chr17:15131800-15135600	Strong transcription	NHDF-Ad	bronchial
21	chr17:15131800-15135800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:15131800-15136000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr17:15131800-15139800	Strong transcription	Fetal Stomach	stomach
24	chr17:15132000-15135200	Strong transcription	Colon Smooth Muscle	Colon
25	chr17:15132200-15135600	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr17:15132200-15136000	Strong transcription	Fetal Muscle Leg	muscle
27	chr17:15132200-15136600	Strong transcription	Lung	lung
28	chr17:15132200-15136600	Weak transcription	Small Intestine	intestine
29	chr17:15132200-15136800	Strong transcription	Fetal Intestine Large	intestine
30	chr17:15132200-15139400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr17:15132200-15144400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr17:15132200-15158800	Weak transcription	Hela-S3	cervix
33	chr17:15132400-15135800	Strong transcription	Ovary	ovary
34	chr17:15132400-15136000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:15132400-15136400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr17:15132400-15136400	Strong transcription	NHLF	lung
37	chr17:15132400-15137200	Strong transcription	HUVEC	blood vessel
38	chr17:15132400-15143200	Strong transcription	HSMMtube	muscle
39	chr17:15132600-15134600	Strong transcription	Brain Anterior Caudate	brain
40	chr17:15132600-15135600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr17:15132600-15135600	Strong transcription	Gastric	stomach
42	chr17:15132600-15135600	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr17:15132600-15135600	Strong transcription	Osteobl	bone
44	chr17:15132600-15135800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr17:15132600-15136000	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr17:15132600-15138400	Strong transcription	Aorta	Aorta
47	chr17:15132600-15140000	Genic enhancers	Left Ventricle	heart
48	chr17:15132600-15142800	Weak transcription	Esophagus	oesophagus
49	chr17:15132800-15134800	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr17:15132800-15135400	Strong transcription	Sigmoid Colon	Sigmoid Colon

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