Variant report

Variant	rs9899379
Chromosome Location	chr17:15083481-15083482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12103534	0.92[ASN][1000 genomes]
rs13027	0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs16951239	0.87[EUR][1000 genomes]
rs16951263	1.00[CEU][hapmap]
rs2215236	0.85[EUR][1000 genomes]
rs3744333	0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs3785646	1.00[CEU][hapmap]
rs3785653	0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs3785654	0.87[EUR][1000 genomes]
rs3826362	1.00[CEU][hapmap]
rs4791614	0.84[EUR][1000 genomes]
rs59723054	0.85[EUR][1000 genomes]
rs6502439	0.87[EUR][1000 genomes]
rs7215851	0.83[EUR][1000 genomes]
rs7221491	0.83[EUR][1000 genomes]
rs72812936	0.85[EUR][1000 genomes]
rs72812942	0.87[EUR][1000 genomes]
rs72812947	0.85[EUR][1000 genomes]
rs73977960	0.90[EUR][1000 genomes]
rs73977961	0.90[EUR][1000 genomes]
rs740649	0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs9635677	0.92[ASN][1000 genomes]
rs9889622	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15075200-15083600	Weak transcription	Brain Hippocampus Middle	brain
2	chr17:15075200-15088200	Weak transcription	Adipose Nuclei	Adipose
3	chr17:15082400-15083800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr17:15082400-15083800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr17:15082400-15085400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr17:15082400-15085600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr17:15082600-15083600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr17:15082600-15083600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr17:15082600-15083600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr17:15082600-15083800	Enhancers	K562	blood
11	chr17:15082600-15084000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr17:15082600-15084800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr17:15082600-15085000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr17:15082800-15084400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr17:15083000-15084000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr17:15083000-15084000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr17:15083200-15084600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:15083400-15083800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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