Variant report

Variant	rs2215236
Chromosome Location	chr17:15098319-15098320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13027	0.86[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16951239	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16951263	1.00[CEU][hapmap]
rs3744333	0.86[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3785646	1.00[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs3785653	0.86[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3785654	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3826362	1.00[CEU][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs59723054	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6502439	0.91[EUR][1000 genomes]
rs7215851	0.86[CHB][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7221491	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72812936	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72812942	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72812947	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73977960	0.94[EUR][1000 genomes]
rs73977961	0.94[EUR][1000 genomes]
rs740649	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9889622	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9899379	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15096400-15098600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:15097400-15098600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr17:15097600-15098800	Enhancers	HSMMtube	muscle
4	chr17:15097600-15099000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:15097800-15098800	Enhancers	Fetal Heart	heart
6	chr17:15097800-15099000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:15098200-15098400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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