Variant report

Variant	rs73977960
Chromosome Location	chr17:15085127-15085128
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13027	0.94[EUR][1000 genomes]
rs16951239	0.92[EUR][1000 genomes]
rs2215236	0.94[EUR][1000 genomes]
rs3744333	0.94[EUR][1000 genomes]
rs3785653	0.92[EUR][1000 genomes]
rs3785654	0.92[EUR][1000 genomes]
rs4791614	0.83[EUR][1000 genomes]
rs59723054	0.94[EUR][1000 genomes]
rs6502439	0.85[EUR][1000 genomes]
rs7215851	0.89[EUR][1000 genomes]
rs7221491	0.89[EUR][1000 genomes]
rs72812936	0.94[EUR][1000 genomes]
rs72812942	0.92[EUR][1000 genomes]
rs72812947	0.94[EUR][1000 genomes]
rs73977961	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs740649	0.94[EUR][1000 genomes]
rs9889622	0.85[EUR][1000 genomes]
rs9899379	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1990	chr17:15041267-15094044	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15075200-15088200	Weak transcription	Adipose Nuclei	Adipose
2	chr17:15082400-15085400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr17:15082400-15085600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr17:15083800-15087400	Weak transcription	K562	blood
5	chr17:15084000-15088400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:15084400-15085200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:15084400-15085600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:15084600-15088800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:15084800-15085400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:15084800-15085600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr17:15085000-15087400	Weak transcription	Fetal Muscle Leg	muscle
12	chr17:15085000-15088600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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