Variant report

Variant	rs61008807
Chromosome Location	chr4:6767429-6767430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:6735428..6736986-chr4:6766734..6768260,2	MCF-7	breast:
2	chr4:6762561..6768449-chr4:6782490..6785602,9	MCF-7	breast:
3	chr4:6761834..6766024-chr4:6766286..6770008,4	MCF-7	breast:
4	chr4:6728845..6730988-chr4:6766751..6769398,2	K562	blood:
5	chr4:6759340..6762124-chr4:6764165..6768519,5	K562	blood:
6	chr4:6754218..6757243-chr4:6763885..6768388,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58061876	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078506	1.00[AMR][1000 genomes]
rs73078508	1.00[AMR][1000 genomes]
rs73078521	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6757200-6769400	Weak transcription	Pancreas	Pancrea
2	chr4:6757200-6769400	Weak transcription	Right Atrium	heart
3	chr4:6763600-6769200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:6763600-6773000	Enhancers	Fetal Thymus	thymus
5	chr4:6764200-6767800	Weak transcription	Primary T cells from cord blood	blood
6	chr4:6764200-6769200	Weak transcription	HSMMtube	muscle
7	chr4:6765600-6767800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:6765600-6769000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:6765600-6769400	Weak transcription	Esophagus	oesophagus
10	chr4:6765600-6769400	Weak transcription	A549	lung
11	chr4:6765600-6770000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:6765600-6771000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:6765600-6781400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:6765800-6768400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr4:6765800-6773800	Weak transcription	Hela-S3	cervix
16	chr4:6766000-6768200	Weak transcription	HepG2	liver
17	chr4:6766000-6769200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:6766000-6769200	Weak transcription	K562	blood
19	chr4:6766400-6769200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:6766600-6769200	Weak transcription	Placenta	Placenta
21	chr4:6767000-6767600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:6767400-6767800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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