Variant report

Variant	rs73078506
Chromosome Location	chr4:6756268-6756269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6754218..6757243-chr4:6763885..6768388,4	MCF-7	breast:
2	chr4:6746815..6751486-chr4:6752660..6758347,9	K562	blood:
3	chr4:6753663..6758255-chr4:6759229..6763983,8	K562	blood:
4	chr4:6752580..6754083-chr4:6754451..6756445,2	K562	blood:
5	chr4:6724533..6728626-chr4:6753921..6757298,3	K562	blood:
6	chr4:6731795..6733991-chr4:6753938..6756410,3	K562	blood:
7	chr4:6753877..6756919-chr4:6761128..6766161,4	K562	blood:
8	chr4:6749749..6752867-chr4:6753663..6758123,8	MCF-7	breast:
9	chr4:6755213..6756775-chr4:6812260..6814420,2	MCF-7	breast:
10	chr4:6731034..6734296-chr4:6753817..6757174,4	K562	blood:
11	chr4:6747801..6758653-chr4:6781464..6786525,19	MCF-7	breast:
12	chr4:6754703..6756446-chr4:6759253..6761126,2	MCF-7	breast:
13	chr4:6753758..6756716-chr4:6847642..6849921,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170871	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58061876	1.00[AMR][1000 genomes]
rs61008807	1.00[AMR][1000 genomes]
rs73078508	1.00[AMR][1000 genomes]
rs73078521	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461190	chr4:6755324-6833794	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv593525	chr4:6755324-6833794	Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6747600-6757600	Enhancers	Placenta	Placenta
2	chr4:6749600-6762400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:6751600-6756800	Weak transcription	Left Ventricle	heart
4	chr4:6751600-6756800	Weak transcription	Ovary	ovary
5	chr4:6751600-6756800	Weak transcription	Right Atrium	heart
6	chr4:6751600-6756800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:6751600-6757000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:6752200-6760800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:6752400-6756800	Weak transcription	Pancreas	Pancrea
10	chr4:6752400-6756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr4:6753000-6760400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:6753800-6756800	Weak transcription	A549	lung
13	chr4:6753800-6764800	Weak transcription	Hela-S3	cervix
14	chr4:6754200-6756800	Weak transcription	Esophagus	oesophagus
15	chr4:6754400-6756800	Weak transcription	Spleen	Spleen
16	chr4:6754400-6758400	Weak transcription	Fetal Intestine Small	intestine
17	chr4:6754600-6762000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:6754800-6757200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:6755000-6756800	Weak transcription	Right Ventricle	heart
20	chr4:6755200-6756600	Weak transcription	Fetal Intestine Large	intestine
21	chr4:6755200-6756800	Weak transcription	Gastric	stomach
22	chr4:6755200-6757000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:6755400-6757400	Enhancers	K562	blood
24	chr4:6755400-6757800	Enhancers	Liver	Liver
25	chr4:6755400-6760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:6755400-6763400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:6755600-6757200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:6756000-6756800	Enhancers	HepG2	liver

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