Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:140054759..140056405-chr6:140060893..140063706,2	K562	blood:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17754158	1.00[ASN][1000 genomes]
rs17754188	1.00[ASN][1000 genomes]
rs17754253	1.00[ASN][1000 genomes]
rs41488649	1.00[ASN][1000 genomes]
rs4269390	1.00[ASN][1000 genomes]
rs4551184	1.00[ASN][1000 genomes]
rs56338776	1.00[ASN][1000 genomes]
rs57240852	1.00[ASN][1000 genomes]
rs57871203	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58602282	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61079096	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61227659	1.00[ASN][1000 genomes]
rs621498	1.00[ASN][1000 genomes]
rs6906113	1.00[ASN][1000 genomes]
rs73557403	1.00[ASN][1000 genomes]
rs73557405	1.00[ASN][1000 genomes]
rs73557408	1.00[ASN][1000 genomes]
rs73557411	1.00[ASN][1000 genomes]
rs73557413	1.00[ASN][1000 genomes]
rs73558051	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73570339	1.00[ASN][1000 genomes]
rs73574327	1.00[ASN][1000 genomes]
rs73574340	1.00[ASN][1000 genomes]
rs73574342	1.00[ASN][1000 genomes]
rs73775652	1.00[ASN][1000 genomes]
rs73775687	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775688	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73775700	1.00[ASN][1000 genomes]
rs73778029	1.00[ASN][1000 genomes]
rs73778039	1.00[ASN][1000 genomes]
rs73778040	1.00[ASN][1000 genomes]
rs7743795	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv464065	chr6:140027836-140085873	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv604766	chr6:140027836-140085873	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140054800-140072000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:140055000-140064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:140059400-140063200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:140060400-140063400	Weak transcription	NHDF-Ad	bronchial
5	chr6:140060600-140063400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:140060600-140065400	Weak transcription	Adipose Nuclei	Adipose
7	chr6:140060800-140063600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140060800-140064000	Weak transcription	A549	lung
9	chr6:140060800-140064200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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