Variant report
| Variant | rs61079096 |
|---|---|
| Chromosome Location | chr6:140123104-140123105 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs17754158 | 1.00[ASN][1000 genomes] |
| rs17754188 | 1.00[ASN][1000 genomes] |
| rs17754253 | 1.00[ASN][1000 genomes] |
| rs41488649 | 1.00[ASN][1000 genomes] |
| rs4269390 | 1.00[ASN][1000 genomes] |
| rs4551184 | 1.00[ASN][1000 genomes] |
| rs56338776 | 1.00[ASN][1000 genomes] |
| rs57240852 | 1.00[ASN][1000 genomes] |
| rs57871203 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58602282 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61009323 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61227659 | 1.00[ASN][1000 genomes] |
| rs621498 | 1.00[ASN][1000 genomes] |
| rs6906113 | 1.00[ASN][1000 genomes] |
| rs73557403 | 1.00[ASN][1000 genomes] |
| rs73557405 | 1.00[ASN][1000 genomes] |
| rs73557408 | 1.00[ASN][1000 genomes] |
| rs73557411 | 1.00[ASN][1000 genomes] |
| rs73557413 | 1.00[ASN][1000 genomes] |
| rs73558051 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73570339 | 1.00[ASN][1000 genomes] |
| rs73574327 | 1.00[ASN][1000 genomes] |
| rs73574340 | 1.00[ASN][1000 genomes] |
| rs73574342 | 1.00[ASN][1000 genomes] |
| rs73775652 | 1.00[ASN][1000 genomes] |
| rs73775687 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73775688 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73775700 | 1.00[ASN][1000 genomes] |
| rs73778029 | 1.00[ASN][1000 genomes] |
| rs73778039 | 1.00[ASN][1000 genomes] |
| rs73778040 | 1.00[ASN][1000 genomes] |
| rs7743795 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869066 | chr6:139777114-140639695 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv830820 | chr6:140059279-140255292 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | nsv1017015 | chr6:140084137-140300565 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019407 | chr6:140087307-140304334 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv1022881 | chr6:140098646-140172570 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 6 | nsv886692 | chr6:140111650-140155090 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:140123000-140123400 | Enhancers | Fetal Intestine Small | intestine |
| 2 | chr6:140123000-140123400 | Enhancers | Skeletal Muscle Female | skeletal muscle |
