Variant report

Variant	rs61013776
Chromosome Location	chr11:120993723-120993724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs594711	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs600937	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs628721	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs642548	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs667125	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:120980600-120998400	Weak transcription	Fetal Brain Female	brain
4	chr11:120984400-120993800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:120991800-120998600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:120992800-120998600	Weak transcription	Brain Germinal Matrix	brain
7	chr11:120993200-121008000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:120993400-120994000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:120993600-120994200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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