Variant report

Variant	rs667125
Chromosome Location	chr11:120984999-120985000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11218148	1.00[YRI][hapmap]
rs1829	0.81[JPT][hapmap]
rs4936576	1.00[YRI][hapmap]
rs4936578	1.00[YRI][hapmap]
rs594711	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs600937	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs606916	0.81[JPT][hapmap]
rs61013776	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs628721	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs642548	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7125224	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3323922	chr11:120984942-120986190	Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120976600-120992200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:120980000-120991000	Weak transcription	Aorta	Aorta
5	chr11:120980600-120998400	Weak transcription	Fetal Brain Female	brain
6	chr11:120981400-120992400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:120983400-120991000	Weak transcription	Fetal Muscle Leg	muscle
8	chr11:120983400-120993400	Weak transcription	Brain Substantia Nigra	brain
9	chr11:120983600-120987600	Weak transcription	Fetal Lung	lung
10	chr11:120983800-120991000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr11:120983800-120992800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:120983800-120993200	Weak transcription	Fetal Brain Male	brain
13	chr11:120984400-120985000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:120984400-120993800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:120984800-120988400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:120984800-120988600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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