Variant report

Variant	rs61016272
Chromosome Location	chr4:118738038-118738039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11935661	1.00[AMR][1000 genomes]
rs17866059	1.00[AMR][1000 genomes]
rs17867039	1.00[AMR][1000 genomes]
rs72907341	1.00[AMR][1000 genomes]
rs72907347	1.00[AMR][1000 genomes]
rs72907351	1.00[AMR][1000 genomes]
rs72907357	1.00[AMR][1000 genomes]
rs72907371	1.00[AMR][1000 genomes]
rs72907393	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909318	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909338	1.00[AMR][1000 genomes]
rs72909367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911303	1.00[AMR][1000 genomes]
rs72911317	1.00[AMR][1000 genomes]
rs72911320	1.00[AMR][1000 genomes]
rs72911326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118736000-118739600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:118736200-118739800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:118737000-118739600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:118737000-118739600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:118737200-118739400	Enhancers	Dnd41	blood
6	chr4:118737600-118739400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:118737600-118739800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:118738000-118738400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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