Variant report

Variant	rs72909318
Chromosome Location	chr4:118719877-118719878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11935661	1.00[AMR][1000 genomes]
rs17866059	1.00[AMR][1000 genomes]
rs17867039	1.00[AMR][1000 genomes]
rs61016272	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907341	1.00[AMR][1000 genomes]
rs72907347	1.00[AMR][1000 genomes]
rs72907351	1.00[AMR][1000 genomes]
rs72907357	1.00[AMR][1000 genomes]
rs72907371	1.00[AMR][1000 genomes]
rs72907393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909332	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909338	1.00[AMR][1000 genomes]
rs72909367	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909372	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72911303	1.00[AMR][1000 genomes]
rs72911317	1.00[AMR][1000 genomes]
rs72911320	1.00[AMR][1000 genomes]
rs72911326	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879838	chr4:118681261-118753062	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118716000-118721800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:118719200-118720000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:118719400-118720400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:118719400-118720600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:118719800-118720400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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