Variant report

Variant	rs61017356
Chromosome Location	chr15:93512986-93512987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:93512125-93513023	HepG2	liver:	n/a	n/a
2	POLR2A	chr15:93511743-93512990	K562	blood:	n/a	n/a
3	CTCF	chr15:93512860-93513010	HRPEpiC	eye:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93510873..93513397-chr15:93516990..93519575,2	K562	blood:
2	chr15:93512123..93513973-chr15:93521429..93523422,2	K562	blood:
3	chr15:93511174..93514102-chr15:93516805..93519386,2	MCF-7	breast:
4	chr15:93504557..93506512-chr15:93511692..93514285,2	K562	blood:
5	chr15:93501140..93503509-chr15:93512727..93514419,2	K562	blood:

No data

Variant related genes	Relation type
CHD2	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16947279	0.80[AMR][1000 genomes]
rs1898914	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1898915	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2272454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2272455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2272456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2388053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4778071	1.00[AFR][1000 genomes]
rs57518365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57602473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58304402	1.00[AFR][1000 genomes]
rs58367771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58592069	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs60635695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61035863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61286161	1.00[AFR][1000 genomes]
rs61334597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162369	0.82[AMR][1000 genomes]
rs963719	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93493200-93533000	Strong transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:93493200-93536000	Strong transcription	HSMM	muscle
3	chr15:93493200-93571000	Strong transcription	Dnd41	blood
4	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr15:93493400-93548000	Strong transcription	Muscle Satellite Cultured Cells	--
6	chr15:93493400-93568600	Strong transcription	Liver	Liver
7	chr15:93493400-93569600	Strong transcription	Placenta	Placenta
8	chr15:93493400-93571000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:93493400-93571000	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr15:93493600-93521600	Strong transcription	Osteobl	bone
11	chr15:93493600-93523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:93493800-93522400	Strong transcription	Primary B cells from peripheral blood	blood
14	chr15:93493800-93532600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:93493800-93561400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:93494000-93520800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:93494000-93568200	Strong transcription	Fetal Thymus	thymus
19	chr15:93494000-93570400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr15:93494000-93570800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:93494000-93571000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:93494000-93571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:93494400-93540600	Strong transcription	Primary T cells from cord blood	blood
24	chr15:93495000-93524800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:93496600-93525800	Weak transcription	Stomach Mucosa	stomach
26	chr15:93497600-93517800	Weak transcription	Esophagus	oesophagus
27	chr15:93501400-93524000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:93501600-93521600	Strong transcription	NH-A	brain
29	chr15:93502400-93523600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:93504000-93523400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:93504000-93567800	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr15:93504600-93513800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:93504800-93515400	Weak transcription	Lung	lung
34	chr15:93505000-93513000	Strong transcription	K562	blood
35	chr15:93505000-93569800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:93505200-93514200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:93505400-93513200	Strong transcription	HMEC	breast
38	chr15:93505400-93514800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
39	chr15:93506000-93569800	Strong transcription	HepG2	liver
40	chr15:93506400-93513000	Strong transcription	Fetal Kidney	kidney
41	chr15:93506400-93561800	Strong transcription	A549	lung
42	chr15:93506400-93569600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr15:93507000-93532800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:93507400-93517800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:93507800-93517800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr15:93508000-93532600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:93508400-93513800	Strong transcription	Fetal Intestine Small	intestine
48	chr15:93508600-93513800	Strong transcription	Fetal Stomach	stomach
49	chr15:93509000-93513000	Strong transcription	NHEK	skin
50	chr15:93509600-93519800	Strong transcription	Primary hematopoietic stem cells	blood

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