Variant report

Variant	rs61286161
Chromosome Location	chr15:93412150-93412151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93347590..93349786-chr15:93410153..93413692,3	MCF-7	breast:
2	chr15:93410852..93415965-chr15:93422830..93429141,8	K562	blood:
3	chr15:93397765..93404838-chr15:93410272..93414991,6	MCF-7	breast:
4	chr15:93362859..93367460-chr15:93410831..93415229,10	MCF-7	breast:
5	chr15:93361853..93370156-chr15:93409891..93415394,15	MCF-7	breast:
6	chr15:93411880..93416683-chr15:93418729..93427514,10	K562	blood:
7	chr15:93388979..93392872-chr15:93411165..93413494,3	MCF-7	breast:
8	chr15:93408054..93409795-chr15:93411069..93413476,2	K562	blood:
9	chr15:93353098..93355321-chr15:93411583..93413814,3	K562	blood:
10	chr15:93351239..93355096-chr15:93409806..93415420,10	MCF-7	breast:
11	chr15:93357309..93358856-chr15:93411238..93412934,2	MCF-7	breast:
12	chr15:93350501..93355702-chr15:93411636..93415920,12	MCF-7	breast:
13	chr15:93412014..93413857-chr15:93441466..93443735,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000272888	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000264123	Chromatin interaction
ENSG00000258922	Chromatin interaction
ENSG00000173575	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1898914	1.00[AFR][1000 genomes]
rs1898915	1.00[AFR][1000 genomes]
rs2272454	1.00[AFR][1000 genomes]
rs2272455	1.00[AFR][1000 genomes]
rs2272456	1.00[AFR][1000 genomes]
rs2388053	1.00[AFR][1000 genomes]
rs4778071	1.00[AFR][1000 genomes]
rs57518365	1.00[AFR][1000 genomes]
rs57602473	1.00[AFR][1000 genomes]
rs58304402	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58367771	1.00[AFR][1000 genomes]
rs58592069	1.00[AFR][1000 genomes]
rs60249668	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60403782	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60635695	1.00[AFR][1000 genomes]
rs61017356	1.00[AFR][1000 genomes]
rs61035863	1.00[AFR][1000 genomes]
rs61334597	1.00[AFR][1000 genomes]
rs963719	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
5	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93396800-93412400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93408200-93413200	Weak transcription	K562	blood
3	chr15:93410600-93412200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:93410600-93412200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:93410600-93412400	Weak transcription	HepG2	liver
6	chr15:93410800-93412200	Weak transcription	NHEK	skin
7	chr15:93411800-93412200	Enhancers	A549	lung
8	chr15:93411800-93414000	Enhancers	Placenta	Placenta
9	chr15:93412000-93412200	Enhancers	Hela-S3	cervix
10	chr15:93412000-93413800	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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