Variant report

Variant	rs6102817
Chromosome Location	chr20:41021303-41021304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12329587	1.00[AMR][1000 genomes]
rs13433281	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6093671	1.00[AMR][1000 genomes]
rs6102834	1.00[AMR][1000 genomes]
rs6102854	1.00[AMR][1000 genomes]
rs6102886	1.00[AMR][1000 genomes]
rs6102891	1.00[AMR][1000 genomes]
rs7267575	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8119919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41020200-41022000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr20:41020400-41022200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr20:41020600-41021600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr20:41020600-41022000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr20:41020600-41022000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr20:41020600-41022200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:41020600-41022400	Enhancers	Adipose Nuclei	Adipose
8	chr20:41020800-41021400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr20:41020800-41022000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr20:41021000-41022000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr20:41021200-41021800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr20:41021200-41021800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr20:41021200-41022000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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