Variant report

Variant	rs6102834
Chromosome Location	chr20:41067273-41067274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12329587	1.00[AMR][1000 genomes]
rs13433281	1.00[AMR][1000 genomes]
rs6016782	1.00[EUR][1000 genomes]
rs6030280	1.00[EUR][1000 genomes]
rs6030283	1.00[EUR][1000 genomes]
rs6030284	1.00[EUR][1000 genomes]
rs6072697	1.00[MEX][hapmap]
rs6093646	1.00[EUR][1000 genomes]
rs6093647	1.00[EUR][1000 genomes]
rs6093649	0.85[MKK][hapmap];1.00[EUR][1000 genomes]
rs6093651	1.00[EUR][1000 genomes]
rs6093671	1.00[AMR][1000 genomes]
rs6102817	1.00[AMR][1000 genomes]
rs6102848	1.00[EUR][1000 genomes]
rs6102854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6102857	1.00[EUR][1000 genomes]
rs6102858	1.00[EUR][1000 genomes]
rs6102886	1.00[AMR][1000 genomes]
rs6102891	1.00[AMR][1000 genomes]
rs7267575	1.00[AMR][1000 genomes]
rs8119919	1.00[AMR][1000 genomes]
rs8123061	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41042000-41070000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:41066800-41067400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr20:41067200-41069800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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