Variant report

Variant	rs61028681
Chromosome Location	chr1:213649570-213649571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17020746	1.00[EUR][1000 genomes]
rs17020760	1.00[EUR][1000 genomes]
rs61321218	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73082880	1.00[EUR][1000 genomes]
rs73082886	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73099738	1.00[EUR][1000 genomes]
rs9803934	1.00[EUR][1000 genomes]
rs9804082	1.00[EUR][1000 genomes]
rs9804109	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9804130	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9804134	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv526119	chr1:213637483-213652148	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv549179	chr1:213641943-213674732	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv520354	chr1:213645844-213652148	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213645800-213649800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:213647400-213650200	Enhancers	Fetal Heart	heart
3	chr1:213649200-213649600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:213649200-213649600	Enhancers	Fetal Muscle Trunk	muscle
5	chr1:213649200-213650600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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