Variant report
| Variant | rs6103061 |
|---|---|
| Chromosome Location | chr20:41465908-41465909 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:41464381..41466534-chr20:41468260..41469973,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs28600713 | 1.00[AMR][1000 genomes] |
| rs6016892 | 0.85[AMR][1000 genomes] |
| rs6016894 | 0.85[AMR][1000 genomes] |
| rs6016895 | 0.85[AMR][1000 genomes] |
| rs6016899 | 1.00[AMR][1000 genomes] |
| rs6016901 | 0.85[AMR][1000 genomes] |
| rs6030482 | 0.85[AMR][1000 genomes] |
| rs6030483 | 0.85[AMR][1000 genomes] |
| rs6030485 | 0.85[AMR][1000 genomes] |
| rs6030487 | 0.85[AMR][1000 genomes] |
| rs6030488 | 0.85[AMR][1000 genomes] |
| rs6030495 | 0.85[AMR][1000 genomes] |
| rs6030497 | 0.85[AMR][1000 genomes] |
| rs6030500 | 0.85[AMR][1000 genomes] |
| rs6030514 | 0.85[AMR][1000 genomes] |
| rs6093738 | 0.85[AMR][1000 genomes] |
| rs6103046 | 0.85[AMR][1000 genomes] |
| rs6103050 | 1.00[AMR][1000 genomes] |
| rs6103051 | 1.00[AMR][1000 genomes] |
| rs6103055 | 0.85[AMR][1000 genomes] |
| rs6103056 | 0.85[AMR][1000 genomes] |
| rs731609 | 0.85[AMR][1000 genomes] |
| rs7363793 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1058990 | chr20:41289969-41543912 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv544277 | chr20:41289969-41543912 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1063450 | chr20:41409901-41880620 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv1060690 | chr20:41413369-41851935 | Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv1066088 | chr20:41417205-42060036 | Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 6 | esv3383635 | chr20:41465833-41466174 | Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:41464400-41466400 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr20:41464800-41466000 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
