Variant report

Variant	rs61036537
Chromosome Location	chr15:52585475-52585476
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52584377..52586164-chr15:52849893..52851751,2	MCF-7	breast:
2	chr15:52548134..52549154-chr15:52584600..52585596,7	MCF-7	breast:
3	chr15:52548220..52549072-chr15:52585130..52585678,2	MCF-7	breast:
4	chr15:52584512..52586382-chr15:52971188..52973757,2	MCF-7	breast:
5	chr15:52585351..52588570-chr15:52858851..52862304,3	MCF-7	breast:
6	chr15:52536664..52559220-chr15:52576974..52590204,72	MCF-7	breast:
7	chr15:52541572..52560373-chr15:52569752..52591000,64	MCF-7	breast:
8	chr15:52583678..52585995-chr15:52615862..52618102,2	MCF-7	breast:
9	chr15:52584393..52589074-chr15:52819513..52822265,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000047346	Chromatin interaction
ENSG00000128833	Chromatin interaction
ENSG00000197535	Chromatin interaction
ENSG00000128989	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7182467	1.00[EUR][1000 genomes]
rs73406654	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73406663	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73406667	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73406668	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52556000-52587000	Weak transcription	Brain Hippocampus Middle	brain
2	chr15:52565800-52587000	Weak transcription	Right Atrium	heart
3	chr15:52571200-52585800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:52571200-52587000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:52574600-52587000	Weak transcription	Brain Anterior Caudate	brain
6	chr15:52580400-52587000	Weak transcription	Right Ventricle	heart
7	chr15:52581000-52587200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:52581200-52587000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:52581400-52585800	Weak transcription	Fetal Intestine Small	intestine
10	chr15:52582200-52586800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:52582400-52586400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:52582400-52586400	Weak transcription	Hela-S3	cervix
13	chr15:52582400-52586600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:52582400-52586800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:52582400-52586800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:52582400-52587000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:52582400-52587200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:52583400-52586000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:52583600-52587000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:52583800-52587000	Weak transcription	Fetal Kidney	kidney
21	chr15:52584400-52586000	Enhancers	Fetal Muscle Leg	muscle
22	chr15:52584400-52586400	Genic enhancers	HepG2	liver
23	chr15:52584800-52585800	Enhancers	Stomach Mucosa	stomach
24	chr15:52584800-52586200	Genic enhancers	Gastric	stomach
25	chr15:52584800-52586800	Enhancers	Primary B cells from peripheral blood	blood
26	chr15:52584800-52586800	Enhancers	A549	lung
27	chr15:52585000-52585600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr15:52585000-52585800	Weak transcription	Brain Angular Gyrus	brain
29	chr15:52585000-52585800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr15:52585000-52586200	Genic enhancers	Esophagus	oesophagus
31	chr15:52585000-52586200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
32	chr15:52585000-52586400	Enhancers	Duodenum Mucosa	Duodenum
33	chr15:52585000-52586600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr15:52585200-52586200	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr15:52585200-52586400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:52585200-52586400	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:52585200-52586800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr15:52585200-52586800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:52585200-52586800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:52585200-52586800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:52585200-52587000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:52585200-52587200	Weak transcription	Left Ventricle	heart
43	chr15:52585200-52587600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:52585400-52585600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:52585400-52585600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:52585400-52585600	Enhancers	Spleen	Spleen
47	chr15:52585400-52585800	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr15:52585400-52586000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr15:52585400-52586000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr15:52585400-52586000	Enhancers	Colonic Mucosa	Colon

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