Variant report

Variant	rs73406663
Chromosome Location	chr15:52587317-52587318
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:52585770..52587442-chr15:52877005..52879641,2	MCF-7	breast:
2	chr15:52585776..52589284-chr15:52859101..52864638,8	MCF-7	breast:
3	chr15:52586746..52588342-chr15:52615809..52618694,2	MCF-7	breast:
4	chr15:52586224..52587758-chr15:52636445..52638760,2	MCF-7	breast:
5	chr15:52586831..52588797-chr15:52969729..52971575,2	MCF-7	breast:
6	chr15:52585351..52588570-chr15:52858851..52862304,3	MCF-7	breast:
7	chr15:52536664..52559220-chr15:52576974..52590204,72	MCF-7	breast:
8	chr15:52586418..52589137-chr15:52642806..52644960,2	MCF-7	breast:
9	chr15:52541572..52560373-chr15:52569752..52591000,64	MCF-7	breast:
10	chr1:164755849..164758773-chr15:52587181..52589348,2	MCF-7	breast:
11	chr15:52584393..52589074-chr15:52819513..52822265,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197535	Chromatin interaction
ENSG00000047346	Chromatin interaction
ENSG00000260618	Chromatin interaction
ENSG00000185630	Chromatin interaction
ENSG00000128989	Chromatin interaction
ENSG00000128833	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs61036537	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7182467	1.00[EUR][1000 genomes]
rs73406654	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73406667	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73406668	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52585200-52587600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:52586200-52587400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:52586200-52588000	Active TSS	Pancreas	Pancrea
4	chr15:52586400-52587400	Flanking Active TSS	HepG2	liver
5	chr15:52586600-52587400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr15:52586600-52588600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:52586800-52587400	Flanking Active TSS	A549	lung
8	chr15:52586800-52587600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:52586800-52587800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:52586800-52588200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr15:52586800-52588200	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr15:52586800-52588200	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr15:52586800-52588400	Active TSS	H1 Cell Line	embryonic stem cell
14	chr15:52586800-52588600	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr15:52587000-52587400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:52587000-52587400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:52587000-52587400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:52587000-52587400	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:52587000-52587400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr15:52587000-52587400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
21	chr15:52587000-52587400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:52587000-52587400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
23	chr15:52587000-52587400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:52587000-52587400	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr15:52587000-52587400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:52587000-52587400	Active TSS	Fetal Kidney	kidney
27	chr15:52587000-52587400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
28	chr15:52587000-52587400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
29	chr15:52587000-52587400	Active TSS	Lung	lung
30	chr15:52587000-52587400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
31	chr15:52587000-52587400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
32	chr15:52587000-52587400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
33	chr15:52587000-52587400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr15:52587000-52587400	Enhancers	Spleen	Spleen
35	chr15:52587000-52587600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
36	chr15:52587000-52587600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:52587000-52587600	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:52587000-52587600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr15:52587000-52587600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:52587000-52587600	Flanking Active TSS	Liver	Liver
41	chr15:52587000-52587600	Flanking Active TSS	Brain Hippocampus Middle	brain
42	chr15:52587000-52587600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
43	chr15:52587000-52587600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
44	chr15:52587000-52587600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
45	chr15:52587000-52587800	Bivalent/Poised TSS	Fetal Intestine Large	intestine
46	chr15:52587000-52587800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
47	chr15:52587000-52588000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:52587000-52588000	Flanking Active TSS	Primary hematopoietic stem cells	blood
49	chr15:52587000-52588000	Bivalent Enhancer	Fetal Brain Male	brain
50	chr15:52587000-52588200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood

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