Variant report

Variant	rs610467
Chromosome Location	chr10:5929265-5929266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:5928985-5929332	IMR90	lung:	n/a	n/a
2	POLR2A	chr10:5929230-5929316	HUVEC	blood vessel:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:5904346..5907644-chr10:5928919..5931742,3	MCF-7	breast:
2	chr10:5725094..5729377-chr10:5927689..5933777,6	MCF-7	breast:
3	chr10:5853532..5857435-chr10:5928623..5934190,13	MCF-7	breast:
4	chr10:5852595..5861125-chr10:5921136..5936216,31	MCF-7	breast:
5	chr10:5929157..5931311-chr10:6018059..6019673,2	MCF-7	breast:
6	chr10:5853820..5856785-chr10:5927225..5934067,15	K562	blood:
7	chr10:5925580..5929335-chr10:5933926..5939138,5	K562	blood:
8	chr10:5853439..5857708-chr10:5926443..5936823,24	K562	blood:

No data

Variant related genes	Relation type
FBXO18	TF binding region
ENSG00000057608	Chromatin interaction
ENSG00000134470	Chromatin interaction
ENSG00000272764	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000240180	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs627595	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs632639	0.81[AFR][1000 genomes]
rs641034	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv466723	chr10:5920836-5930579	Strong transcription Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv549905	chr10:5920836-5930579	Flanking Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	nsv466724	chr10:5920836-5938544	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
10	nsv549906	chr10:5920836-5938544	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5913000-5929800	Weak transcription	Fetal Heart	heart
2	chr10:5913000-5929800	Weak transcription	Psoas Muscle	Psoas
3	chr10:5914000-5929600	Weak transcription	NHLF	lung
4	chr10:5915600-5930000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr10:5915600-5930000	Weak transcription	HUVEC	blood vessel
6	chr10:5915800-5930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:5915800-5930200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr10:5916200-5929400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:5916200-5929800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:5916200-5929800	Strong transcription	Fetal Intestine Large	intestine
11	chr10:5916400-5929800	Strong transcription	Fetal Muscle Trunk	muscle
12	chr10:5916600-5929400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:5916600-5930600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:5916800-5930200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:5918000-5929800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:5918000-5930000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:5918200-5929600	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr10:5918200-5930200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr10:5919200-5930000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:5919600-5929800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:5920200-5929800	Weak transcription	Right Ventricle	heart
22	chr10:5920200-5930600	Weak transcription	Aorta	Aorta
23	chr10:5920400-5929800	Weak transcription	Colonic Mucosa	Colon
24	chr10:5920400-5930000	Weak transcription	Hela-S3	cervix
25	chr10:5923800-5929400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:5923800-5929800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:5923800-5929800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr10:5924000-5929400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:5924000-5929400	Strong transcription	Brain Hippocampus Middle	brain
30	chr10:5924000-5929400	Strong transcription	Placenta	Placenta
31	chr10:5924000-5929800	Strong transcription	HMEC	breast
32	chr10:5924200-5930000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:5924200-5930000	Strong transcription	Primary T cells from cord blood	blood
34	chr10:5924400-5930400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:5926000-5930000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr10:5926200-5929800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:5926200-5930000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr10:5926400-5929600	Weak transcription	Fetal Brain Male	brain
39	chr10:5926400-5929600	Weak transcription	Gastric	stomach
40	chr10:5926400-5929600	Weak transcription	Left Ventricle	heart
41	chr10:5926400-5929800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:5926400-5929800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr10:5926400-5929800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:5926400-5930200	Weak transcription	Fetal Kidney	kidney
45	chr10:5926600-5929600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:5927000-5929400	Weak transcription	Lung	lung
47	chr10:5927000-5929800	Weak transcription	Pancreas	Pancrea
48	chr10:5927000-5929800	Weak transcription	Spleen	Spleen
49	chr10:5927000-5930000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:5927000-5930200	Weak transcription	H9 Cell Line	embryonic stem cell

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