Variant report

Variant	rs641034
Chromosome Location	chr10:5949229-5949230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5940356..5945616-chr10:5946052..5950228,5	K562	blood:

Variant related genes	Relation type
ENSG00000134452	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1323659	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387148	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2669124	0.82[EUR][1000 genomes]
rs2669127	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs593026	0.82[EUR][1000 genomes]
rs596156	0.82[EUR][1000 genomes]
rs609269	0.82[EUR][1000 genomes]
rs610467	0.81[AFR][1000 genomes]
rs627595	0.81[AFR][1000 genomes]
rs631947	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs632639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644474	0.81[EUR][1000 genomes]
rs646406	0.82[EUR][1000 genomes]
rs646490	0.82[EUR][1000 genomes]
rs647391	0.81[EUR][1000 genomes]
rs664577	0.82[EUR][1000 genomes]
rs666831	0.81[EUR][1000 genomes]
rs673496	0.82[EUR][1000 genomes]
rs675416	0.82[EUR][1000 genomes]
rs679610	0.83[EUR][1000 genomes]
rs682555	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7075778	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs792347	0.82[EUR][1000 genomes]
rs9329328	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv825229	chr10:5886905-5967697	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5933200-5949800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:5933200-5977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:5933400-5949800	Weak transcription	Fetal Brain Male	brain
4	chr10:5933600-5951600	Weak transcription	Stomach Mucosa	stomach
5	chr10:5935600-5962000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr10:5936600-5952600	Weak transcription	Hela-S3	cervix
7	chr10:5936800-5953200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:5938000-5950800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr10:5938200-5950800	Weak transcription	NH-A	brain
10	chr10:5939400-5950800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr10:5941000-5950800	Weak transcription	Gastric	stomach
12	chr10:5944000-5981600	Strong transcription	Fetal Intestine Small	intestine
13	chr10:5944400-5952000	Strong transcription	K562	blood
14	chr10:5944400-5955000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:5944600-5952800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:5944600-5981200	Strong transcription	Fetal Thymus	thymus
17	chr10:5945000-5949800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:5945000-5953800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:5945800-5980800	Strong transcription	Thymus	Thymus
20	chr10:5946600-5950800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:5947000-5980800	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr10:5947000-5981600	Strong transcription	Placenta	Placenta
23	chr10:5947200-5981000	Strong transcription	Fetal Intestine Large	intestine
24	chr10:5947400-5970800	Strong transcription	Liver	Liver
25	chr10:5947400-5974400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:5947400-5981200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:5947600-5968400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:5947600-5968600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:5947600-5968600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:5947600-5975000	Strong transcription	Primary T cells from cord blood	blood
31	chr10:5947600-5981000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr10:5947600-5981000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:5947600-5981000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:5947600-5981000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:5947600-5981200	Strong transcription	Primary B cells from peripheral blood	blood
36	chr10:5947800-5950600	Weak transcription	Small Intestine	intestine
37	chr10:5947800-5961000	Strong transcription	Fetal Brain Female	brain
38	chr10:5947800-5974000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:5947800-5974400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:5947800-5974600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:5948000-5949800	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:5948000-5950200	Genic enhancers	NHEK	skin
43	chr10:5948000-5950600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:5948000-5955800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr10:5948000-5960200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:5948000-5974600	Strong transcription	Fetal Lung	lung
47	chr10:5948000-5974800	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:5948000-5975000	Strong transcription	Primary B cells from cord blood	blood
49	chr10:5948000-5975800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:5948200-5949400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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