Variant report

Variant	rs61048100
Chromosome Location	chr15:54684483-54684484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs57168382	0.87[ASN][1000 genomes]
rs57177642	0.85[ASN][1000 genomes]
rs57728847	0.87[ASN][1000 genomes]
rs57770294	0.85[ASN][1000 genomes]
rs58949736	0.80[ASN][1000 genomes]
rs59782560	0.85[ASN][1000 genomes]
rs59906408	0.84[ASN][1000 genomes]
rs59966258	0.90[ASN][1000 genomes]
rs60029691	0.85[ASN][1000 genomes]
rs60219899	0.85[ASN][1000 genomes]
rs60982342	0.84[ASN][1000 genomes]
rs61031605	0.94[ASN][1000 genomes]
rs61404786	0.85[ASN][1000 genomes]
rs61502810	0.84[ASN][1000 genomes]
rs73415711	0.84[ASN][1000 genomes]
rs73415765	0.90[ASN][1000 genomes]
rs73417776	1.00[ASN][1000 genomes]
rs74015191	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1845471	chr15:54556063-54685463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54680200-54690200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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