Variant report
| Variant | rs73417776 |
|---|---|
| Chromosome Location | chr15:54685856-54685857 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:54685449..54687612-chr15:54692436..54693986,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16974580 | 0.99[AFR][1000 genomes] |
| rs57168382 | 0.87[ASN][1000 genomes] |
| rs57177642 | 0.85[ASN][1000 genomes] |
| rs57728847 | 0.87[ASN][1000 genomes] |
| rs57770294 | 0.85[ASN][1000 genomes] |
| rs58949736 | 0.80[ASN][1000 genomes] |
| rs59782560 | 0.85[ASN][1000 genomes] |
| rs59906408 | 0.84[ASN][1000 genomes] |
| rs59966258 | 0.90[ASN][1000 genomes] |
| rs60029691 | 0.85[ASN][1000 genomes] |
| rs60219899 | 0.85[ASN][1000 genomes] |
| rs60982342 | 0.84[ASN][1000 genomes] |
| rs61031605 | 0.94[ASN][1000 genomes] |
| rs61048100 | 1.00[ASN][1000 genomes] |
| rs61404786 | 0.85[ASN][1000 genomes] |
| rs61502810 | 0.84[ASN][1000 genomes] |
| rs73415711 | 0.84[ASN][1000 genomes] |
| rs73415765 | 0.90[ASN][1000 genomes] |
| rs73417784 | 0.94[AFR][1000 genomes] |
| rs74015191 | 0.94[ASN][1000 genomes] |
| rs74015196 | 0.93[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv817539 | chr15:54132584-55095235 | Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv904230 | chr15:54685463-54779312 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv457150 | chr15:54685463-54787358 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv569501 | chr15:54685463-54787358 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:54680200-54690200 | Weak transcription | Aorta | Aorta |
| 2 | chr15:54685600-54694800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
