Variant report

Variant	rs61052245
Chromosome Location	chr9:101932442-101932443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101932270..101933911-chr9:101982534..101984839,2	K562	blood:
2	chr9:101918300..101922228-chr9:101930528..101933247,3	K562	blood:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000106803	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10988726	0.86[ASN][1000 genomes]
rs10988727	0.86[ASN][1000 genomes]
rs10988728	0.86[ASN][1000 genomes]
rs11568750	0.86[ASN][1000 genomes]
rs11568795	0.86[ASN][1000 genomes]
rs11568811	0.86[ASN][1000 genomes]
rs12685067	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101929800-101933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:101930000-101933000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:101930400-101933200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr9:101930400-101936600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:101930800-101936000	Weak transcription	GM12878-XiMat	blood
6	chr9:101931000-101933800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr9:101931400-101935400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:101931400-101937000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:101931600-101932600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:101931600-101933000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr9:101931600-101933400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr9:101931600-101934200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:101931600-101934400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:101931600-101947000	Weak transcription	Right Atrium	heart
15	chr9:101931800-101932800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:101932000-101932800	Enhancers	H9 Cell Line	embryonic stem cell
17	chr9:101932000-101932800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:101932000-101932800	Enhancers	Colon Smooth Muscle	Colon
19	chr9:101932200-101932600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr9:101932200-101932800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:101932200-101932800	Enhancers	Fetal Kidney	kidney
22	chr9:101932200-101933000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:101932200-101933000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr9:101932200-101933000	Enhancers	Brain Cingulate Gyrus	brain
25	chr9:101932200-101933000	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr9:101932200-101933200	Enhancers	Fetal Stomach	stomach
27	chr9:101932200-101933400	Enhancers	Rectal Smooth Muscle	rectum
28	chr9:101932200-101933600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr9:101932200-101933800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:101932200-101934400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:101932200-101935400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:101932200-101937000	Enhancers	Fetal Intestine Small	intestine
33	chr9:101932200-101940200	Enhancers	Fetal Intestine Large	intestine
34	chr9:101932400-101932600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:101932400-101932600	Enhancers	K562	blood
36	chr9:101932400-101932800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr9:101932400-101932800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:101932400-101932800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
39	chr9:101932400-101932800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr9:101932400-101932800	Enhancers	Brain Hippocampus Middle	brain
41	chr9:101932400-101933000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr9:101932400-101933000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr9:101932400-101933000	Enhancers	Fetal Brain Male	brain
44	chr9:101932400-101933000	Flanking Bivalent TSS/Enh	HepG2	liver
45	chr9:101932400-101933200	Enhancers	Brain Germinal Matrix	brain
46	chr9:101932400-101933200	Enhancers	Fetal Brain Female	brain
47	chr9:101932400-101933800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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