Variant report

Variant	rs11568750
Chromosome Location	chr9:101882866-101882867
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101881980..101884233-chr9:101923631..101926384,2	MCF-7	breast:
2	chr9:101877984..101880524-chr9:101882685..101887051,4	K562	blood:
3	chr9:101866089..101868012-chr9:101879699..101883328,3	MCF-7	breast:
4	chr9:101881851..101884905-chr9:101885246..101888669,5	K562	blood:
5	chr9:101882379..101885644-chr9:101887362..101889635,3	MCF-7	breast:
6	chr9:101882797..101885085-chr9:101894383..101896843,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10988713	1.00[CEU][hapmap]
rs10988726	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10988727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11568795	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11568811	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12683974	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12685067	1.00[ASN][1000 genomes]
rs61052245	0.86[ASN][1000 genomes]
rs6478973	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv831666	chr9:101874985-102018690	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101868400-101896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:101868600-101889800	Weak transcription	Ovary	ovary
3	chr9:101868600-101894400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:101869200-101884800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:101869800-101884800	Weak transcription	A549	lung
6	chr9:101870000-101908600	Weak transcription	Brain Germinal Matrix	brain
7	chr9:101870600-101889800	Weak transcription	NHLF	lung
8	chr9:101872600-101887800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:101874600-101889800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:101875600-101894600	Weak transcription	Spleen	Spleen
11	chr9:101876400-101889400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr9:101876600-101904200	Weak transcription	Liver	Liver
13	chr9:101877000-101884000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:101877000-101888200	Weak transcription	Osteobl	bone
15	chr9:101877000-101889400	Weak transcription	HSMMtube	muscle
16	chr9:101877200-101884400	Weak transcription	Aorta	Aorta
17	chr9:101877400-101887800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr9:101877400-101888200	Weak transcription	Right Ventricle	heart
19	chr9:101877600-101883800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:101878000-101883800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:101878000-101897400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:101878800-101891800	Weak transcription	Fetal Stomach	stomach
23	chr9:101878800-101892400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:101878800-101903200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:101879000-101883600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:101879000-101883800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:101879000-101884000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:101879000-101887400	Weak transcription	Fetal Brain Female	brain
29	chr9:101879400-101883400	Weak transcription	HMEC	breast
30	chr9:101879400-101884000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:101879800-101884000	Weak transcription	Colon Smooth Muscle	Colon
32	chr9:101879800-101888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:101880000-101883000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr9:101880800-101883000	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr9:101881000-101883000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:101881200-101883000	Enhancers	Duodenum Mucosa	Duodenum
37	chr9:101881400-101884200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:101881600-101883800	Weak transcription	Left Ventricle	heart
39	chr9:101881600-101884400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:101881600-101885200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr9:101881800-101883000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr9:101881800-101883200	Weak transcription	NHEK	skin
43	chr9:101881800-101883800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:101881800-101884000	Weak transcription	Psoas Muscle	Psoas
45	chr9:101881800-101884400	Enhancers	Primary B cells from peripheral blood	blood
46	chr9:101881800-101885200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:101881800-101885800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr9:101881800-101887800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:101881800-101887800	Weak transcription	NHDF-Ad	bronchial
50	chr9:101882000-101883200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links